A helical aromatic foldamer was identified that undergoes tRNA acylation by a flexizyme and ribosomal peptide initiation with yields sufficiently {high|higher} to {perform|carry out|execute} an mRNA {display|show} {selection of|choice of|collection of} macrocyclic foldamer-peptide hybrids. A hybrid macrocyle binder {to the|towards the|for the} C-lobe {of the|from the|in the|on the|with the|of your} E6AP HECT domain was {selected|chosen} that showed {highly|extremely|very|hugely} converged peptide residues. A crystal structure and molecular dynamics simulations revealed that {both|each} the peptide and foldamer are helical in an intriguing reciprocal stapling {fashion|style}. The {strong|powerful|robust|sturdy} residue convergence {could be|might be|could possibly be|may be|may very well be} rationalized {based|primarily based} on their involvement in {specific|particular|certain|distinct|precise} interactions. The foldamer stabilizes the peptide helix {through|via|by means of|by way of} stapling and {through|via|by means of|by way of} contacts with {key|important|crucial|essential} residues. It {appears|seems} to also contribute to protein binding by direct protein interactions. {The results|The outcomes} altogether highlight {possible|feasible|achievable|attainable|doable|probable} {benefits|advantages|rewards|positive aspects|added benefits} in inserting an aromatic foldamer into a peptide macrocycle for the {purpose|objective|goal} of protein recognition. 78703-55-6 web Dibenzyl carbonate site PMID:23910527

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